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BioProject ID	KAP210038
Sample Group Accession ID	KASG210075
Sample Title	Variants analysis of stomach organoids using whole exome-seq & Integrative analysis of transcriptomic and epigenomic dynamics of stomach organoids using single cell RNA-seq and ATAC-seq.
Description	Recently, organoids have been successfully constructed in various organs, including stomach, using a 3D organoid culture system. In this study, we aim to understand the mechanism by which epigenetic/genetic changes are related to transcriptomic regulation during stomach organogenesis in single cell level. Stomach organoids derived from normal tissues adjacent to gastric cancer were constructed from nine patients. Single cell RNA-seq (scRNA-seq), single cell ATAC-seq (scATAC-seq), and whole exome-seq (WES) were performed to analyze open chromatin regions (OCRs) and variants that affect gene expression.
Sample Type	Human sample
Registration Date	2021-07-21
Number of BioSamples	14
Number of Experiments	14

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KAD

BioProject ID	Sample Group Accession ID	KAD Accession ID	Registration Date	Platform	Strategy	Selection
KAP210038	KASG210075	KAD2100105	2021-07-23	HiSeq X Ten, Illumina HiSeq 2000	Org1_TRANSCRIPTOMIC , Org2_TRANSCRIPTOMIC , Org3_TRANSCRIPTOMIC , Org4_TRANSCRIPTOMIC , Org5_TRANSCRIPTOMIC , Org6789_TRANSCRIPTOMIC , Org67_ATAC_TRANSCRIPTOMIC , Org3_WXS, Org4_WXS, Org5_WXS, Org6_WXS, Org7_WXS, Org8_WXS, Org9_WXS	TRANSCRIPTOMIC , GENOMIC