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BioProject ID : KAP220224

Project title : Genome Analysis of Marine Animals

Submitter

**Submitter**
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Name	Park Hyun
Organization	Korea University
Department	Division of Biotechnology

Date

**Date**
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Registration Date	2022-04-26

Project Design

**Project Design**
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NTIS Number	1525008302
Project Title	Genome Analysis of Marine Animals
Relevance	environmental
Description	"Assignment goal Through genome production, processing, standard map construction and advanced functional analysis of marine animals (including strategic species), the evolution of marine animals/understanding strategies to respond to changes in the marine environment/establishment of sovereignty over marine biological resources Acquire academic/national/social/industrial values by discovering new marine biomaterials. Securing key base data for the development of aquatic biotechnology through detoxification of Takifugu obscurus genome and analysis of Takifugu obscurus transcriptome Assignment contents Analysis of Takifugu obscurus genomics 1) Takifugu obscurus DNA Extraction - HMW DNA extraction and QC from the muscle tissue of Takifugu obscurus 2) Libraries creation 3) Pacbio Sequel sequencing 4) Assembly 5) Scaffolding 6) Assembly QC (BUSCO Results) 7) Transcriptome sequencing 8) Annotation 9) Comparison between Takifugu obscurus and other fishes Takifugu obscurus transcriptome analysis 10) RNAseq experiments on salinity effects - Analysis of changes in expression of Takifugu obscurus transcripts according to salinity changes 10) RNAseq experiments of fertilization on salinity effects - Analysis of changes in transcriptome expression for each stage of development under different salinity conditions - Perform RNAseq analysis by extracting RNA by occurrence period Expected Effects and Utilization ○ Technical aspects - Accumulate genome analysis know-how by analyzing Takifugu obscurus genome, and build genome infrastructure for marine animals ○ Economic and industrial aspects - Contribute to creating a national economic growth engine and strengthening competitiveness by providing a basis for nurturing various bio industries by utilizing Takifugu obscurus's bioinformation - Improving the possibility of improving new breeds by discovering genes that form special traits in marine animals ○ Social aspect - Laying the foundation for the conservation of Korea's unique marine animal resources - Contribute to the establishment of strategies to respond to changes in biological resources due to changes in the marine environment How to use ○ Provide high-quality reference genome of domestic marine animals - Establishment of domestic marine animal infrastructure through genome analysis of Takifugu obscurus and suggest molecular mechanisms related to the evolution, development, and environmental adaptability of marine organisms based on comparative genomes - To devise a method to strengthen marine organisms' ability to respond to the environment by revealing genes related to stress and environmental adaptability, and suggest industrial application possibilities"
Project Data Type *	Whole Genome sequencing
Sample Scope *	Monoisolate

Hierarchy

**Hierarchy**
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Umbrella Project	NA

Publications

**Publications**
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PubMed ID
DOI

Sample Group

BioSample Accession ID	Project Title	Sample Type	Registration Date
KASG220372	Assembly of Takifugu obscurus genome	Model organism or animal sample	2022-04-26

Submitter’s other BioProjects

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BioProject Accession ID	Project Title	Sample Scope	Project Data Type	Registration Date
KAP220260	Genome Analysis of Marine Organisms and Development of Functional Applications	Environment	Metagenome	2022-04-27
KAP210017	Genome analysis of Fisheries organisms	Multiisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2021-02-03
KAP220237	Bioinformatics study for analyses of marine microbial genomes	Monoisolate	Whole Genome sequencing	2022-04-27
KAP220220	Genome Analysis of Marine and Fisheries Organisms and Development of Functional Application	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP220254	Comparative Study on Domestic Skate Species Using Genome Information	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-27
KAP220238	Genome analysis for marine plants and its application study	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP220257	Comparative Study on Domestic Skate Species Using Genome Information	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-27
KAP210030	The development of kit for screening of cancer related target genes with high sensitivity in the liquid biopsy	Multiisolate	Targeted Locus (Loci)	2021-03-04
KAP220243	Analysis and Development of Application Platform of Valuable Marine Microbial Genome	Monoisolate	Whole Genome sequencing	2022-04-27
KAP220227	Genome analysis of fisheries organisms	Monoisolate	Whole Genome sequencing	2022-04-26
KAP220274	Analysis and Development of Application Platform of Valuable Marine Microbial Genome	Monoisolate	Whole Genome sequencing	2022-04-27
KAP220242	Genome analysis for marine plants and its application study	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP210022	Establishment of reference genome of Marine organisms	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2021-02-03
KAP220208	Marine animal genome information analysis and utilization-based research	Multiisolate	Whole Genome sequencing	2022-04-26
KAP220252	Genome Analysis of Marine Organisms and Development of Functional Applications	Environment	Metagenome	2022-04-26
KAP220248	Genome analysis for marine plants and its application study	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP220215	Genome analysis of marine bacteria and development of functional application	Monoisolate	Whole Genome sequencing	2022-04-26
KAP210027	Genome Analysis of Marine Animals	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2021-02-03
KAP220236	Research based on analysis and utilization of marine aquatic organisms genome information	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP220223	Construction and analysis of the 3rd generation of reference genomes of marine animals	Monoisolate	Whole Genome sequencing	2022-04-26
KAP220234	Genome analysis of aquatic organisms and development of functional applications	Monoisolate	Whole Genome sequencing	2022-04-26
KAP220225	Establishment of reference genome of Marine organisms	Monoisolate	Whole Genome sequencing	2022-04-26
KAP210044	Genome analysis of Fisheries organisms	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2021-08-04
KAP220266	Marine animal genome analysis research	Multiisolate	Whole Genome sequencing	2022-04-26
KAP220337	Mining of novel biomaterials	Monoisolate	Transcriptome or Gene Expression	2022-05-03
KAP220263	Genome analysis of Fisheries organisms	Monoisolate	Whole Genome sequencing	2022-04-26
KAP220380	Functional microbial genome analysis of fermented foods and discovery of useful genes	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220228	Genome analysis for marine plants and its application study	Monoisolate	Whole Genome sequencing	2022-04-26
KAP220216	Genome analysis for marine plants and its application study	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP220224	Genome Analysis of Marine Animals	Monoisolate	Whole Genome sequencing	2022-04-26
KAP220452	Genome analysis of marine bacteria and development of functional application	Monoisolate	Whole Genome sequencing	2022-07-27
KAP210018	Genome analysis for marine plants and its application study	Monoisolate	Whole Genome sequencing	2021-02-03
KAP220458	Genome analysis of aquatic organisms and development of functional applications	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220261	Genome analysis of aquatic organisms and development of functional applications	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-27
KAP220374	Genomics based research on industrializationof valuable microbes originated in traditional Nuruk	Multi-species	Whole Genome sequencing	2022-07-11
KAP220221	Genome Analysis of Marine Organisms and Development of Functional Applications	Environment	Metagenome	2022-04-26
KAP220273	Detailed Task C1_Joint 1_ Marine Microorganisms Genomic Information Analysis and Utilization of the Foundation	Monoisolate	Whole Genome sequencing	2022-04-27
KAP220251	Bioinformatics study for analyses of marine microbial genomes	Monoisolate	Whole Genome sequencing	2022-04-27
KAP220258	Genome Analysis of Marine Organisms and Development of Functional Applications	Environment	Metagenome	2022-04-26
KAP220232	Establishment of reference genome of Marine organisms	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP220456	Mining of novel biomaterials	Multiisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220217	Genome analysis of marine bacteria and development of functional application	Monoisolate	Whole Genome sequencing	2022-04-26
KAP210046	Genome Analysis of Marine Animals	Monoisolate	Whole Genome sequencing	2021-08-04
KAP220323	Whole genome analysis in marine animals/ comparative genomics/ phylogenomics	Monoisolate		2022-05-02
KAP220385	NGS-based microbial genome analysis for companion animals	Monoisolate	Whole Genome sequencing	2022-07-11
KAP210041	Analysis of genomes, transcriptomes and intestinal microorganisms of pond smelt	Multiisolate,Environment	Whole Genome sequencing,Transcriptome or Gene Expression,Gut/Skin Microbiome	2021-08-04
KAP220247	Genomics of thermophilic acetogen Moorella thermoacetica	Multiisolate	Whole Genome sequencing	2022-04-26
KAP220457	Genome analysis for marine plants and its application study	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP210026	Establishment of reference genome of Marine organisms	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2021-02-03
KAP210043	NA	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2021-08-04
KAP220253	Analysis of genomic information of marine aquatic organisms and establishment of the foundation for utilization (R&D)	Multiisolate	Whole Genome sequencing	2022-04-26
KAP220240	Bioinformatics study for analyses of marine microbial genomes	Monoisolate	Whole Genome sequencing	2022-04-27
KAP220226	Genome analysis of marine bacteria and development of functional application	Monoisolate	Whole Genome sequencing	2022-04-26
KAP220267	Comparative Study on Domestic Skate Species Using Genome Information	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-27
KAP210025	Analysis and Development of Application Platform of Valuable Marine Microbial Genome	Monoisolate	Whole Genome sequencing	2021-02-03
KAP210024	Genome Analysis of Marine and Fisheries Organisms and Development of Functional Application	Multiisolate,Environment	Whole Genome sequencing,Transcriptome or Gene Expression,Gut/Skin Microbiome	2021-02-03
KAP220278	Establishment of reference genome of Marine organisms	Monoisolate	Whole Genome sequencing	2022-04-28
KAP210023	Establishment of reference genome of Marine organisms	Monoisolate	Whole Genome sequencing	2021-02-03
KAP220264	Research on the analysis and application of genetic information on marine animals	Multiisolate	Whole Genome sequencing	2022-04-27
KAP220259	Genome analysis of Fisheries organisms	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-27
KAP220211	Genome of Microbes from a Marine Invertebrate species	Discovering and utilizing genes related to physiological activity among useful microorganisms such as marine life-derived microorganisms and lava seawater	Genome analysis of useful microorganisms isolated from marine invertebrates, etc. and their application studies	2022-04-26
KAP210045	Genome Analysis of Marine Animals	Monoisolate	Whole Genome sequencing	2021-08-04
KAP220454	Genome analysis of aquatic organisms and development of functional applications	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220249	Genome analysis of aquatic organisms and development of functional applications	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP220250	Genome analysis of marine bacteria and development of functional application	Monoisolate	Whole Genome sequencing	2022-04-27
KAP220382	Complete reference and comparative genomics analysis of useful filamentous fungi for agriculture and food industry	Monoisolate	Whole Genome sequencing	2022-07-11
KAP220222	Genome analysis of Fisheries organisms	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP220262	Genome analysis of Fisheries organisms	Monoisolate	Whole Genome sequencing	2022-04-26
KAP220218	Ministry of Oceans and Fisheries	Multiisolate	Whole Genome sequencing	2022-04-27
KAP220255	Genome Analysis of Marine Organisms and Development of Functional Applications	Environment	Metagenome	2022-04-26
KAP220256	Comparative Study on Domestic Skate Species Using Genome Information	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-27
KAP220269	Construction of Analysis and application of marine aquaculture genome information	Environment	Metagenome	2022-04-27
KAP220265	Marine animal genome analysis research	Multiisolate	Whole Genome sequencing	2022-04-26
KAP220276	Analysis and Development of Application Platform of Valuable Marine Microbial Genome	Monoisolate	Whole Genome sequencing	2022-04-28
KAP220246	Genome of Microbes from a Marine Invertebrate species	Genomic study related to the physiological activity of marine microorganisms isolated from Jeju lava seawater	Genome analysis of microorganisms useful for separation of lava seawater	2022-04-27
KAP220235	Establishment of reference genome of Marine organisms	Monoisolate	Whole Genome sequencing	2022-04-27
KAP210021	Genome Analysis of Marine Animals	Multi-species	Whole Genome sequencing,Transcriptome or Gene Expression	2021-02-03
KAP220233	Genome analysis of aquatic organisms and development of functional applications	Monoisolate	Whole Genome sequencing	2022-04-26
KAP220244	Bioinformatics study for analyses of marine microbial genomes	Monoisolate	Whole Genome sequencing	2022-04-27
KAP220231	Genome analysis of Fisheries organisms	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP220275	Analysis and Development of Application Platform of Valuable Marine Microbial Genome	Monoisolate	Whole Genome sequencing	2022-04-27
KAP210020	Genome Analysis of Marine and Fisheries Organisms and Development of Functional Application	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2021-02-03
KAP210019	Genome analysis for marine plants and its application study	Monoisolate	Whole Genome sequencing	2021-02-03
KAP210042	Genome Analysis of Marine Animals	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2021-08-04
KAP220241	Genome analysis for marine plants and its application study	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-27
KAP210047	Genome analysis of fisheries organisms	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2021-08-04
KAP220230	Genome Analysis of Marine Organisms and Development of Functional Applications	Environment	Metagenome	2022-04-26
KAP220453	Comparative Study on Domestic Skate Species Using Genome Information	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP220245	Establishment of reference genome of Marine organisms	Monoisolate	Whole Genome sequencing	2022-04-27
KAP220219	Genome Analysis of Marine Animals	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-04-26
KAP220272	Analysis and Development of Application Platform of Valuable Marine Microbial Genome	Monoisolate	Whole Genome sequencing	2022-04-27
KAP220229	Genome analysis for marine plants and its application study	Monoisolate	Whole Genome sequencing	2022-04-26
KAP220455	Marine animal genome analysis research	Multiisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27

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Browse BioProject

Summary 내용시작

Submitter

Date

Project Design

Hierarchy

Publications

Relations 내용시작

Sample Group

Submitter’s other BioProjects