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BioProject ID : KAP220387

Project title : Deciphering rice microbiomes for the improvement of productivity and sustainability

Submitter

**Submitter**
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Name	Lee Yong Hwan
Organization	Seoul National University
Department	Department of Agricultural Biotechnology

Date

**Date**
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Registration Date	2022-07-12

Project Design

**Project Design**
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NTIS Number	1545023020
Project Title	Deciphering rice microbiomes for the improvement of productivity and sustainability
Relevance	agricultural
Description	This study aims to propose the way to manage crop plants using microbiome-based approaches. The objectives of this study are (1) to characterize bacterial and fungal strains isolated from rice seeds and roles of isolates under stress conditions using metagenomic approaches, (2) to investigate the effects of anaerobic bacteria residing in rhizosphere and volatile organic compounds produced by anaerobic bacteria on rice growth and productivity under greenhouse and field conditions, and (3) to unveil relationships between plants and microbiomes under stress conditions by pathogens.
Project Data Type *	Whole Genome sequencing,Metagenome
Sample Scope *	Multiisolate

Hierarchy

**Hierarchy**
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Umbrella Project	KAU200000

Publications

**Publications**
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PubMed ID
DOI

Sample Group

BioSample Accession ID	Project Title	Sample Type	Registration Date
KASG220771	Whole genome sequence of Microbacterium sp. HW4 isolated from rice seed	Microbe	2022-07-13
KASG220770	Whole genome sequence of Xanthomonas sp. DJ16 isolated from rice seed	Microbe	2022-07-13
KASG220742	Whole genome sequence of Moesziomyces sp. RS1 isolated from rice seed	Microbe	2022-07-13
KASG220744	Whole genome sequence of Methylobacterium sp. JDJ13 isolated from rice seed	Microbe	2022-07-13
KASG220750	Soil bacterial community of rice paddy at the 20 cm depth	Microbe	2022-07-13
KASG220767	Soil fungal community of rice paddy at the 20 cm depth	Microbe	2022-07-13
KASG220754	Clostridium CC2 16s rRNA	Microbe	2022-07-13
KASG220769	Soil fungal community of rice paddy at the 50 cm depth	Microbe	2022-07-13
KASG220755 Lock This is an assignment that cannot be disclosed yet.	Clostridium DG7 16s rRNA	Microbe	2022-07-13
KASG220752	Whole genome sequence of Magnaporthe sp. YHL684 isolated from rice	Microbe	2022-07-13
KASG220758	Soil bacterial community of rice paddy at the 30 cm depth	Microbe	2022-07-13
KASG220768	Soil fungal community of rice paddy at the 30 cm depth	Microbe	2022-07-13
KASG220749	Whole genome sequence of Magnaporthe sp. JDJ2F isolated from rice seed	Microbe	2022-07-13
KASG220759	Soil bacterial community of rice paddy at the 10 cm depth	Microbe	2022-07-13
KASG220760	Soil bacterial community of rice paddy at the 50 cm depth	Microbe	2022-07-13
KASG220757	Fungal community of rice seeds at the harvest stage	Microbe	2022-07-13
KASG220766	Soil fungal community of rice paddy at the 10 cm depth	Microbe	2022-07-13
KASG220756	Bacterial community of rice seeds at the harvest stage	Microbe	2022-07-13

Submitter’s other BioProjects

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BioProject Accession ID	Project Title	Sample Scope	Project Data Type	Registration Date
KAP220336	Genomic analysis of thrips-pathogenic Beauveria bassiana	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220280	Development of valuable wood forming genetic resources through Evo-Devo genomics research	Monoisolate	Transcriptome or Gene Expression	2022-05-02
KAP220409	Whole genome sequencing of sweetpotato (Ipomoea batatas).	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220433	Development of new control measures against bovine Johne	Multi-species	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220302	Metagenomic analysis of beneficial microbial communities in crops and foods	Multi-species	Metagenome	2022-05-02
KAP220384	Metagenome information and system analysis of agricultural and fermented food environments	Environment	Metagenome	2022-07-11
KAP220309	Discovering useful genetic resources based on multi-omics of useful microorganisms for agriculture and food and developing technology to enhance value	Synthetic	Whole Genome sequencing	2022-05-02
KAP220300	Functional microbial genome analysis of fermented foods and discovery of useful genes	Multi-species	Whole Genome sequencing,Metagenome	2022-05-02
KAP220423	De novo sequencing of Senna tora (L.) Roxb. genome	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220434	Functional analysis of microorganisms based on genome-based fermented foods and immunity test	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220422	Analysis of transcriptome and funcitonal metabolites from Senna tora (L.) Roxb.	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP220426	Anaysis of genome structure and bioinformation in perilla	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220408	Whole genome sequencing of sweetpotato (Ipomoea batatas).	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220320	NGS-based microbial genome analysis for companion animals	Multi-species	Whole Genome sequencing,Metagenome	2022-05-02
KAP220447	Discovering useful genetic resources based on multi-omics of useful microorganisms for agriculture and food and developing technology to enhance value	Synthetic	Whole Genome sequencing	2022-07-27
KAP220328	Construction of genetic map and genome structure analysis of Perilla frutescens (L.) var. frutescens	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220440	Genomics based research on industrializationof valuable microbes originated in traditional Nuruk	Multi-species	Whole Genome sequencing	2022-07-27
KAP220332	De novo sequencing and transcriptome analysis of tea plant	Monoisolate	Transcriptome or Gene Expression	2022-05-03
KAP220314	Genome sequencing and gene expression analysis of Protaetia brevitarsis seulensis	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220377	Microbial reference genome sequencing and comparative genomic analysis for agriculture and food	Monoisolate	Whole Genome sequencing	2022-07-11
KAP220437	Development of microbiological agent for immune enhancement based on microbiome in dogs and cats	Multi-species	Whole Genome sequencing	2022-07-27
KAP220297	Microbiome-based intestinal environment improvement effect verification and correlation analysis with intestinal flora	Multiisolate	Metagenome	2022-05-02
KAP220303	Functional, system-level study of rice microbiome using meta-transcriptomics and network analysis	Multi-species	Metagenome	2022-05-02
KAP220316	Development of molecular markers for identification of agricultural traits and discovery of medicinal components-related genes	Monoisolate	Transcriptome or Gene Expression	2022-05-02
KAP220383	Development of probiotic materials for ameliorating stress and type 2 diabetes using microbiome analysis	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220298	Porcine, bovine, and canine gut microbiome analysis to develop a health management strategy	Environment	Metagenome	2022-05-02
KAP220442	Multi-omics based gene function network analysis of food and agricultural microorganisms	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP220289	Whole Genome sequencing,Transcriptome or Functional analysis	Multi-species	Whole Genome sequencing,Transcriptome or Gene Expression,Functional analysis	2022-05-02
KAP220319	Pathogenomics analysis of the airborne fungal pathogens in red peppe	Monoisolate	Transcriptome or Gene Expression	2022-05-02
KAP220410	De novo sequencing of the bellflower genome	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220339	NGS-based large-scale dielectric analysis	Environment	Metagenome	2022-05-03
KAP220299	Investigation of health functionalities of kimchi probiotics in vivo"	Multi-species	Whole Genome sequencing,Metagenome	2022-05-02
KAP220321	Deciphering rice microbiomes for the improvement of productivity and sustainability	Environment	Metagenome	2022-05-02
KAP220335	Microbial reference genome sequencing and comparative genomic analysis for agriculture and food	Multi-species	Whole Genome sequencing	2022-05-03
KAP220284	Artificial intelligence (AI)-based genomics and its application	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220431	Microbiome-based intestinal environment improvement effect verification and correlation analysis with intestinal flora	Environment	Metagenome	2022-07-27
KAP220307	Development of new control measures against bovine Johne	Multiisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220424	Fine Genetic Mapping and Contig Anchoring of Allium cepa and Chrysanthemum boreale	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220285	Genome assembly and development of useful genes	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220327	A study of draft genome construction	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220301	Metagenomics and Metabolomics for Agricultural Microbiome	Multi-species	Whole Genome sequencing,Metagenome	2022-05-02
KAP220430	Metagenomics and Metabolomics for Agricultural Microbiome	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220291	Development of useful genetic markers resource	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220390	Genomics based research on industrializationof valuable microbes originated in traditional Nuruk	Multi-species	Whole Genome sequencing	2022-07-14
KAP220330	Comparative genomics and genotype analysis of sesame	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220378	Development of Raman based cell detechment technology for high-throughput single cell sorting and its genomics	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220375	Culture Collection of Multifunctional Novel Bacteria with Biocontrol Effects using Microbial Culturomics	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220283	Wild watermelon genome assembly and comparative genomics study	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220290	Genetic/transcriptional analysis and biomarker discovery in Mycobacterium avium subsp. paratuberculosis strains	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220338	Functional analysis of microorganisms based on genome-based fermented foods and immunity test	Environment	Metagenome	2022-05-03
KAP220406	Development of Immuno-modulating Mixture to Control the Incidence of Chronic and Acute Diarrhea of Pig through Utilizing Microbial Genome Information	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220435	A study on the mechanism of suppressing odor through genome analysis of functional microorganisms and analysis of intestinal flora and metabolites of pigs	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220333	Introduction of genome information enhancement system and support for NGS analysis	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220445	Development of Disease-customized Probiotics for Infection Control and Inflammation Relief	Multi-species	Whole Genome sequencing	2022-07-27
KAP220310	Metagenomic analysis of Economic Animals	Multi-species	Metagenome	2022-05-02
KAP220428	Completion of the Pinus densiflora reference genome	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP220381	Kimchi probiotics development and health function kimchi industrialization	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220388	Porcine, bovine, and canine gut microbiome analysis to develop a health management strategy	Environment	Metagenome	2022-07-13
KAP220404	(Different from NTIS information) Reference dielectric and ohmix information analysis research of agricultural useful eukaryotic microorganisms	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP230686	Construction of multi-dimensional agricultural omics information system	Monoisolate	Whole Genome sequencing	2023-12-26
KAP230687	Domestic and international collaborative research to utilize agrobiological genome Big data	Monoisolate	Transcriptome or Gene Expression	2023-12-26
KAP220286	Broccoli genome sequencing	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220432	Development of Evaluation System of Food Function baced on Gut Microbiome	Environment	Metagenome	2022-07-27
KAP220439	Development of microbial fungicide for agricultural crops using actinomycetes genomics-driven approaches	Multiisolate	Whole Genome sequencing	2022-07-27
KAP220311	Pathogenomics analysis of the airborne fungal pathogens in rice and red pepper	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220317	Development of microbiological agent for immune enhancement based on microbiome in dogs and cats	Multi-species	Whole Genome sequencing	2022-05-02
KAP220391	Development of microbial agents for the apple disease management and the Solanaceae crop growth based on genetic analysis	Multi-species	Whole Genome sequencing	2022-07-14
KAP220427	Identification of epigenetic factors associated with useful traits and development of epigenetic molecular marker system in the Brassicaceae family	Monoisolate	Whole Genome sequencing,Epigenomics	2022-07-27
KAP220438	Development of probiotic materials for ameliorating stress and type 2 diabetes using microbiome analysis	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220376	Metagenomics and Metabolomics for Agricultural Microbiome	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220372	Development of Evaluation System of Food Function baced on Gut Microbiome	Environment	Metagenome	2022-07-11
KAP220294	Completion of the Pinus densiflora reference genome	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220325	Development of Evaluation System of Food Function baced on Gut Microbiome	Environment	Metagenome	2022-05-03
KAP220308	Elucidation of pathogenesis mechanism of rice pathogenic Fusarum speceis and its application to the development of a disease control strategy	Monoisolate	Transcriptome or Gene Expression	2022-05-02
KAP220441	Functional microbial genome analysis of fermented foods and discovery of useful genes	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220407	Draft genome of the centipede, Scolopendra subspinipes	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220387	Deciphering rice microbiomes for the improvement of productivity and sustainability	Multiisolate	Whole Genome sequencing,Metagenome	2022-07-12
KAP220429	Isolation and genome analysis of beneficial yeast and acetic acid bacteria from natural fermented foods in Korea	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220331	Comparative analysis and its application using multi-dimensional agricultural omics information	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220324	The genome sequencing of strawberry using octoploid inbred lines	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220326	A study on the mechanism of suppressing odor through genome analysis of functional microorganisms and analysis of intestinal flora and metabolites of pigs	Multi-species	Whole Genome sequencing,Metagenome	2022-05-03
KAP220379	Reference genomes and comparative genomics analysis of yeast species useful for agriculture and food	Monoisolate	Whole Genome sequencing	2022-07-11
KAP220446	Elucidation of pathogenesis mechanism of rice pathogenic Fusarum speceis and its application to the development of a disease control strategy	Multi-species	Transcriptome or Gene Expression	2022-07-27
KAP220315	Identification of epigenetic factors associated with useful traits and development of epigenetic molecular marker system in the Brassicaceae family	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220413	Genome sequencing of Perilla	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220403	Development and research of useful trait prediction system by developing metabolite markers	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP220444	Microbial reference genome sequencing and comparative genomic analysis for agriculture and food	Multi-species	Whole Genome sequencing	2022-07-27
KAP220305	Development of new control measures against bovine Johne	Multiisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220411	Chrysanthemum genome sequencing	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220295	Development of probiotic materials for ameliorating stress and type 2 diabetes using microbiome analysis	Multi-species	Whole Genome sequencing,Metagenome	2022-05-02
KAP220416	Korean pear genome sequencing	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220418	Genome of the small brown planthopper, Laodelphax striatellus	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220436	Reference genomes and comparative genomics analysis of yeast species useful for agriculture and food	Multi-species	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220389	Development of new control measures against bovine Johne	Multi-species	Metagenome,Transcriptome or Gene Expression	2022-07-14
KAP220448	Investigation of health functionalities of kimchi probiotics in vivo	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220421	De novo sequencing of Senna tora (L.) Roxb. genome	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220293	Cabbage genome sequencing	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220318	Kimchi probiotics development and health function kimchi industrialization	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220306	Metagenomics and Metabolomics for Agricultural Microbiome	Multi-species	Metagenome	2022-05-02
KAP220420	Construction of integrated omic database in the agriculture, livestock and food	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220405	Development of total analyzing software and system for microbial genomes and transcriptomes using NGS data	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220340	Development of Raman spectroscopy-based microbial desorption technology for high-speed separation of functional single cells and genome analysis	Monoisolate	Whole Genome sequencing,Metagenome	2022-05-03
KAP220443	Development of high value-added products using high-performance microbial resources derived from traditional yeast	Environment	Metagenome	2022-07-27
KAP220296	Metagenome information and system analysis of agricultural and fermented food environments"	Environment	Metagenome	2022-05-02
KAP220386	Microbiome-based intestinal environment improvement effect verification and correlation analysis with intestinal flora	Environment	Metagenome	2022-07-11
KAP220329	Development of high-density genetic map and bioinformatics analysis for Coix lacryma-jobi genome sequencing	Monoisolate	Transcriptome or Gene Expression	2022-05-03
KAP220312	Complete reference and comparative genomics analysis of useful filamentous fungi for agriculture and food industry	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220341	Understanding of Symbiotic Rhizosphere Microbial Community and Development of Growth-Promoting Microbial Consortia for Agricultural Productivity Enhancement	Multi-species	Metagenome	2022-05-03
KAP220282	Genome analysis and construction of genetic map in watermelon and paprika	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220288	Development of microbial agents for the apple disease management and the Solanaceae crop growth based on genetic analysis	Multi-species	Whole Genome sequencing	2022-05-02
KAP220313	Improvement of the Hibiscus syriacus reference genome and development of cold tolerance associated markers	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220322	Production and assembly of Omija genome information	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220419	Construction of reference genome maps of Livestock	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220450	Development of microbial agents for the apple disease management and the Solanaceae crop growth based on genetic analysis	Multi-species	Whole Genome sequencing	2022-07-27
KAP220292	Anaysis of genome structure and bioinformation in perilla	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220414	Draft genome sequence of perilla	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220412	Study of population and evolutionary genomics in livestock	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220415	Genome sequencing and assembly of onion	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220417	Korean pear genetic material characterization	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220281	Isolation and genome analysis of beneficial yeast and acetic acid bacteria from natural fermented foods in Korea	Multispecies, Environment	Whole Genome sequencing,Metagenome	2022-05-02
KAP220425	Fine Genetic Mapping and Contig Anchoring of Chrysanthemum boreale	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220449	Culture Collection of Multifunctional Novel Bacteria with Biocontrol Effects using Microbial Culturomics	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220451	Pipeline discovery of useful genetic resources from large-capacity genetic information and development of useful enzymes	Environment	Metagenome	2022-07-27
KAP220287	Development of molecular markers using comparative genomics	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02

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Browse BioProject

Summary 내용시작

Submitter

Date

Project Design

Hierarchy

Publications

Relations 내용시작

Sample Group

Submitter’s other BioProjects