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BioProject ID : KAP220378

Project title : Development of Raman based cell detechment technology for high-throughput single cell sorting and its genomics

Submitter

**Submitter**
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Name	Lee Tae Kwon
Organization	Yonsei University
Department	Department of environmental engineering

Date

**Date**
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Registration Date	2022-07-11

Project Design

**Project Design**
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NTIS Number	-
Project Title	Development of Raman based cell detechment technology for high-throughput single cell sorting and its genomics
Relevance	agricultural
Description	1. Goal Development of nanoparticle-based Raman spectroscopy technology for high-speed single cell separation and genome analysis - Development of functional microbial community separation technology using magnetic nanoparticles - Development of functional microorganism detection and high-speed separation technology using isotopes and Raman spectroscopy - Development of high-speed separation technology Development of single cell genome analysis and culture technology - Key microorganisms for plant-microbial interaction in drought conditions 2. Abstract 1st year: Development of functional microbial community separation technology using magnetic nanoparticles - Establishment of manufacturing conditions for magnetic nanoparticles - Analysis of functional microbial community separation efficiency and community functionality using magnetic nanoparticles (mixed strains vs. environmental samples) - Functional microorganisms Evaluation of technology applicability through community cluster and functional genetic characterization 2nd year: Raman spectroscopy for desorption of functional microorganisms... 3. Effect - Securing functional single cell selection and high-speed separation technology using Raman spectroscopy - Securing technology to respond to climate change that can promote plant growth using plant-microbial symbiosis in a drought environment - More than 6 SCI(E) grade papers, patent application/ More than 2 registrations, 10 strategic microorganism registrations, 5 metagenome registrations, 2 NABIC registrations
Project Data Type *	Whole Genome sequencing,Metagenome
Sample Scope *	Multi-species

Hierarchy

**Hierarchy**
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Umbrella Project	-

Publications

**Publications**
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PubMed ID
DOI

Sample Group

BioSample Accession ID	Project Title	Sample Type	Registration Date
KASG220683	Metagenomic sequencing of arable soil under drought stress	Environmental, food or other pathogen	2022-07-11
KASG220686	Genomic analysis of bacteria that induces growth for plant	Microbe	2022-07-11
KASG220689	Genomic analysis of bacteria that induces growth for plant (Enterobacter ludwigii PP03)	Microbe	2022-07-11

Submitter’s other BioProjects

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BioProject Accession ID	Project Title	Sample Scope	Project Data Type	Registration Date
KAP220336	Genomic analysis of thrips-pathogenic Beauveria bassiana	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220280	Development of valuable wood forming genetic resources through Evo-Devo genomics research	Monoisolate	Transcriptome or Gene Expression	2022-05-02
KAP220409	Whole genome sequencing of sweetpotato (Ipomoea batatas).	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220433	Development of new control measures against bovine Johne	Multi-species	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220302	Metagenomic analysis of beneficial microbial communities in crops and foods	Multi-species	Metagenome	2022-05-02
KAP220384	Metagenome information and system analysis of agricultural and fermented food environments	Environment	Metagenome	2022-07-11
KAP220309	Discovering useful genetic resources based on multi-omics of useful microorganisms for agriculture and food and developing technology to enhance value	Synthetic	Whole Genome sequencing	2022-05-02
KAP220300	Functional microbial genome analysis of fermented foods and discovery of useful genes	Multi-species	Whole Genome sequencing,Metagenome	2022-05-02
KAP220423	De novo sequencing of Senna tora (L.) Roxb. genome	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220434	Functional analysis of microorganisms based on genome-based fermented foods and immunity test	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220422	Analysis of transcriptome and funcitonal metabolites from Senna tora (L.) Roxb.	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP220426	Anaysis of genome structure and bioinformation in perilla	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220408	Whole genome sequencing of sweetpotato (Ipomoea batatas).	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220320	NGS-based microbial genome analysis for companion animals	Multi-species	Whole Genome sequencing,Metagenome	2022-05-02
KAP220447	Discovering useful genetic resources based on multi-omics of useful microorganisms for agriculture and food and developing technology to enhance value	Synthetic	Whole Genome sequencing	2022-07-27
KAP220328	Construction of genetic map and genome structure analysis of Perilla frutescens (L.) var. frutescens	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220440	Genomics based research on industrializationof valuable microbes originated in traditional Nuruk	Multi-species	Whole Genome sequencing	2022-07-27
KAP220332	De novo sequencing and transcriptome analysis of tea plant	Monoisolate	Transcriptome or Gene Expression	2022-05-03
KAP220314	Genome sequencing and gene expression analysis of Protaetia brevitarsis seulensis	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220377	Microbial reference genome sequencing and comparative genomic analysis for agriculture and food	Monoisolate	Whole Genome sequencing	2022-07-11
KAP220437	Development of microbiological agent for immune enhancement based on microbiome in dogs and cats	Multi-species	Whole Genome sequencing	2022-07-27
KAP220297	Microbiome-based intestinal environment improvement effect verification and correlation analysis with intestinal flora	Multiisolate	Metagenome	2022-05-02
KAP220303	Functional, system-level study of rice microbiome using meta-transcriptomics and network analysis	Multi-species	Metagenome	2022-05-02
KAP220316	Development of molecular markers for identification of agricultural traits and discovery of medicinal components-related genes	Monoisolate	Transcriptome or Gene Expression	2022-05-02
KAP220383	Development of probiotic materials for ameliorating stress and type 2 diabetes using microbiome analysis	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220298	Porcine, bovine, and canine gut microbiome analysis to develop a health management strategy	Environment	Metagenome	2022-05-02
KAP220442	Multi-omics based gene function network analysis of food and agricultural microorganisms	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP220289	Whole Genome sequencing,Transcriptome or Functional analysis	Multi-species	Whole Genome sequencing,Transcriptome or Gene Expression,Functional analysis	2022-05-02
KAP220319	Pathogenomics analysis of the airborne fungal pathogens in red peppe	Monoisolate	Transcriptome or Gene Expression	2022-05-02
KAP220410	De novo sequencing of the bellflower genome	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220339	NGS-based large-scale dielectric analysis	Environment	Metagenome	2022-05-03
KAP220299	Investigation of health functionalities of kimchi probiotics in vivo"	Multi-species	Whole Genome sequencing,Metagenome	2022-05-02
KAP220321	Deciphering rice microbiomes for the improvement of productivity and sustainability	Environment	Metagenome	2022-05-02
KAP220335	Microbial reference genome sequencing and comparative genomic analysis for agriculture and food	Multi-species	Whole Genome sequencing	2022-05-03
KAP220284	Artificial intelligence (AI)-based genomics and its application	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220431	Microbiome-based intestinal environment improvement effect verification and correlation analysis with intestinal flora	Environment	Metagenome	2022-07-27
KAP220307	Development of new control measures against bovine Johne	Multiisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220424	Fine Genetic Mapping and Contig Anchoring of Allium cepa and Chrysanthemum boreale	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220285	Genome assembly and development of useful genes	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220327	A study of draft genome construction	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220301	Metagenomics and Metabolomics for Agricultural Microbiome	Multi-species	Whole Genome sequencing,Metagenome	2022-05-02
KAP220430	Metagenomics and Metabolomics for Agricultural Microbiome	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220291	Development of useful genetic markers resource	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220390	Genomics based research on industrializationof valuable microbes originated in traditional Nuruk	Multi-species	Whole Genome sequencing	2022-07-14
KAP220330	Comparative genomics and genotype analysis of sesame	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220378	Development of Raman based cell detechment technology for high-throughput single cell sorting and its genomics	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220375	Culture Collection of Multifunctional Novel Bacteria with Biocontrol Effects using Microbial Culturomics	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220283	Wild watermelon genome assembly and comparative genomics study	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220290	Genetic/transcriptional analysis and biomarker discovery in Mycobacterium avium subsp. paratuberculosis strains	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220338	Functional analysis of microorganisms based on genome-based fermented foods and immunity test	Environment	Metagenome	2022-05-03
KAP220406	Development of Immuno-modulating Mixture to Control the Incidence of Chronic and Acute Diarrhea of Pig through Utilizing Microbial Genome Information	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220435	A study on the mechanism of suppressing odor through genome analysis of functional microorganisms and analysis of intestinal flora and metabolites of pigs	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220333	Introduction of genome information enhancement system and support for NGS analysis	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220445	Development of Disease-customized Probiotics for Infection Control and Inflammation Relief	Multi-species	Whole Genome sequencing	2022-07-27
KAP220310	Metagenomic analysis of Economic Animals	Multi-species	Metagenome	2022-05-02
KAP220428	Completion of the Pinus densiflora reference genome	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP220381	Kimchi probiotics development and health function kimchi industrialization	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220388	Porcine, bovine, and canine gut microbiome analysis to develop a health management strategy	Environment	Metagenome	2022-07-13
KAP220404	(Different from NTIS information) Reference dielectric and ohmix information analysis research of agricultural useful eukaryotic microorganisms	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP230686	Construction of multi-dimensional agricultural omics information system	Monoisolate	Whole Genome sequencing	2023-12-26
KAP230687	Domestic and international collaborative research to utilize agrobiological genome Big data	Monoisolate	Transcriptome or Gene Expression	2023-12-26
KAP220286	Broccoli genome sequencing	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220432	Development of Evaluation System of Food Function baced on Gut Microbiome	Environment	Metagenome	2022-07-27
KAP220439	Development of microbial fungicide for agricultural crops using actinomycetes genomics-driven approaches	Multiisolate	Whole Genome sequencing	2022-07-27
KAP220311	Pathogenomics analysis of the airborne fungal pathogens in rice and red pepper	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220317	Development of microbiological agent for immune enhancement based on microbiome in dogs and cats	Multi-species	Whole Genome sequencing	2022-05-02
KAP220391	Development of microbial agents for the apple disease management and the Solanaceae crop growth based on genetic analysis	Multi-species	Whole Genome sequencing	2022-07-14
KAP220427	Identification of epigenetic factors associated with useful traits and development of epigenetic molecular marker system in the Brassicaceae family	Monoisolate	Whole Genome sequencing,Epigenomics	2022-07-27
KAP220438	Development of probiotic materials for ameliorating stress and type 2 diabetes using microbiome analysis	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220376	Metagenomics and Metabolomics for Agricultural Microbiome	Multi-species	Whole Genome sequencing,Metagenome	2022-07-11
KAP220372	Development of Evaluation System of Food Function baced on Gut Microbiome	Environment	Metagenome	2022-07-11
KAP220294	Completion of the Pinus densiflora reference genome	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220325	Development of Evaluation System of Food Function baced on Gut Microbiome	Environment	Metagenome	2022-05-03
KAP220308	Elucidation of pathogenesis mechanism of rice pathogenic Fusarum speceis and its application to the development of a disease control strategy	Monoisolate	Transcriptome or Gene Expression	2022-05-02
KAP220441	Functional microbial genome analysis of fermented foods and discovery of useful genes	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220407	Draft genome of the centipede, Scolopendra subspinipes	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220387	Deciphering rice microbiomes for the improvement of productivity and sustainability	Multiisolate	Whole Genome sequencing,Metagenome	2022-07-12
KAP220429	Isolation and genome analysis of beneficial yeast and acetic acid bacteria from natural fermented foods in Korea	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220331	Comparative analysis and its application using multi-dimensional agricultural omics information	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220324	The genome sequencing of strawberry using octoploid inbred lines	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220326	A study on the mechanism of suppressing odor through genome analysis of functional microorganisms and analysis of intestinal flora and metabolites of pigs	Multi-species	Whole Genome sequencing,Metagenome	2022-05-03
KAP220379	Reference genomes and comparative genomics analysis of yeast species useful for agriculture and food	Monoisolate	Whole Genome sequencing	2022-07-11
KAP220446	Elucidation of pathogenesis mechanism of rice pathogenic Fusarum speceis and its application to the development of a disease control strategy	Multi-species	Transcriptome or Gene Expression	2022-07-27
KAP220315	Identification of epigenetic factors associated with useful traits and development of epigenetic molecular marker system in the Brassicaceae family	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220413	Genome sequencing of Perilla	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220403	Development and research of useful trait prediction system by developing metabolite markers	Monoisolate	Transcriptome or Gene Expression	2022-07-27
KAP220444	Microbial reference genome sequencing and comparative genomic analysis for agriculture and food	Multi-species	Whole Genome sequencing	2022-07-27
KAP220305	Development of new control measures against bovine Johne	Multiisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220411	Chrysanthemum genome sequencing	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220295	Development of probiotic materials for ameliorating stress and type 2 diabetes using microbiome analysis	Multi-species	Whole Genome sequencing,Metagenome	2022-05-02
KAP220416	Korean pear genome sequencing	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220418	Genome of the small brown planthopper, Laodelphax striatellus	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220436	Reference genomes and comparative genomics analysis of yeast species useful for agriculture and food	Multi-species	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220389	Development of new control measures against bovine Johne	Multi-species	Metagenome,Transcriptome or Gene Expression	2022-07-14
KAP220448	Investigation of health functionalities of kimchi probiotics in vivo	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220421	De novo sequencing of Senna tora (L.) Roxb. genome	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220293	Cabbage genome sequencing	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220318	Kimchi probiotics development and health function kimchi industrialization	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220306	Metagenomics and Metabolomics for Agricultural Microbiome	Multi-species	Metagenome	2022-05-02
KAP220420	Construction of integrated omic database in the agriculture, livestock and food	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220405	Development of total analyzing software and system for microbial genomes and transcriptomes using NGS data	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220340	Development of Raman spectroscopy-based microbial desorption technology for high-speed separation of functional single cells and genome analysis	Monoisolate	Whole Genome sequencing,Metagenome	2022-05-03
KAP220443	Development of high value-added products using high-performance microbial resources derived from traditional yeast	Environment	Metagenome	2022-07-27
KAP220296	Metagenome information and system analysis of agricultural and fermented food environments"	Environment	Metagenome	2022-05-02
KAP220386	Microbiome-based intestinal environment improvement effect verification and correlation analysis with intestinal flora	Environment	Metagenome	2022-07-11
KAP220329	Development of high-density genetic map and bioinformatics analysis for Coix lacryma-jobi genome sequencing	Monoisolate	Transcriptome or Gene Expression	2022-05-03
KAP220312	Complete reference and comparative genomics analysis of useful filamentous fungi for agriculture and food industry	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220341	Understanding of Symbiotic Rhizosphere Microbial Community and Development of Growth-Promoting Microbial Consortia for Agricultural Productivity Enhancement	Multi-species	Metagenome	2022-05-03
KAP220282	Genome analysis and construction of genetic map in watermelon and paprika	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220288	Development of microbial agents for the apple disease management and the Solanaceae crop growth based on genetic analysis	Multi-species	Whole Genome sequencing	2022-05-02
KAP220313	Improvement of the Hibiscus syriacus reference genome and development of cold tolerance associated markers	Monoisolate	Whole Genome sequencing	2022-05-02
KAP220322	Production and assembly of Omija genome information	Monoisolate	Whole Genome sequencing	2022-05-03
KAP220419	Construction of reference genome maps of Livestock	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-07-27
KAP220450	Development of microbial agents for the apple disease management and the Solanaceae crop growth based on genetic analysis	Multi-species	Whole Genome sequencing	2022-07-27
KAP220292	Anaysis of genome structure and bioinformation in perilla	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02
KAP220414	Draft genome sequence of perilla	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220412	Study of population and evolutionary genomics in livestock	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220415	Genome sequencing and assembly of onion	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220417	Korean pear genetic material characterization	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220281	Isolation and genome analysis of beneficial yeast and acetic acid bacteria from natural fermented foods in Korea	Multispecies, Environment	Whole Genome sequencing,Metagenome	2022-05-02
KAP220425	Fine Genetic Mapping and Contig Anchoring of Chrysanthemum boreale	Monoisolate	Whole Genome sequencing	2022-07-27
KAP220449	Culture Collection of Multifunctional Novel Bacteria with Biocontrol Effects using Microbial Culturomics	Environment	Whole Genome sequencing,Metagenome	2022-07-27
KAP220451	Pipeline discovery of useful genetic resources from large-capacity genetic information and development of useful enzymes	Environment	Metagenome	2022-07-27
KAP220287	Development of molecular markers using comparative genomics	Monoisolate	Whole Genome sequencing,Transcriptome or Gene Expression	2022-05-02

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