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The only cloud-based integrated data analysis service in Korea

Check the basic analysis information by viewing the open programs and pipelines.

Analysis Program

There are a total of 51 Programs registered in Bio-Express.

RunEmbed
Execute embedding algorithms. FIt-SNE, T-SNE, UMAP. T-SNE is T-distributed Stochastic Neighbor Embedding method and is a tool to visualize high-dimensional data. FIt-SNE is FFT-accelerated Interpolation-based t-SNE. It is more faster than original t-SNE. Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction.
  • IDBX03-20240221-0709
  • Root CategoryBioinformatics
  • Sub CategorySingle-Cell-RNA-Sequencing
  • EnvironmentBX_ENV_00
  • LanguagePython
  • CoreSingle
  • Version0.3
  • Registrantbioex
  • Registed Date2024-02-21
  • Modified Date2024-02-21
#fit-sne#tsne#umap#embedding
Species_Abundance
Species abundance/distribution
  • IDBX03-20231017-0675
  • Root CategoryTools
  • Sub CategoryQiime2
  • EnvironmentBX_ENV_00
  • LanguagePython
  • CoreMulti
  • Version1.0
  • Registrantcogate
  • Registed Date2023-10-17
  • Modified Date2023-10-24
#Species abundance/distribution
link.
Merging_sample_data
Merging with Sample data
  • IDBX03-20231017-0672
  • Root CategoryTools
  • Sub CategoryQiime2
  • EnvironmentBX_ENV_00
  • LanguagePython
  • CoreMulti
  • Version1.0
  • Registrantcogate
  • Registed Date2023-10-17
  • Modified Date2023-10-24
#merging sample data
Trimming
trimming
  • IDBX03-20231017-0670
  • Root CategoryTools
  • Sub CategoryQiime2
  • EnvironmentBX_ENV_00
  • LanguagePython
  • CoreMulti
  • Version1
  • Registrantcogate
  • Registed Date2023-10-17
  • Modified Date2023-10-24
#trimming
Demultiplexing
This QIIME 2 plugin supports demultiplexing of single-end and paired-end sequence reads and visualization of sequence quality information.
  • IDBX03-20231017-0669
  • Root CategoryTools
  • Sub CategoryQiime2
  • EnvironmentBX_ENV_00
  • LanguagePython
  • CoreMulti
  • Version1.0
  • Registrantcogate
  • Registed Date2023-10-17
  • Modified Date2023-10-17
#Demultiplexing
Denoising
Denoising
  • IDBX03-20231017-0671
  • Root CategoryTools
  • Sub CategoryQiime2
  • EnvironmentBX_ENV_00
  • LanguagePython
  • CoreMulti
  • Version1.0
  • Registrantcogate
  • Registed Date2023-10-17
  • Modified Date2023-10-24
#Denoising
Taxonomy_Assigning
Assigning taxonomy to ASV or OTU representative sequences.
  • IDBX03-20231017-0676
  • Root CategoryTools
  • Sub CategoryQiime2
  • EnvironmentBX_ENV_00
  • LanguagePython
  • CoreMulti
  • Version1.0
  • Registrantcogate
  • Registed Date2023-10-17
  • Modified Date2023-10-17
#Taxonomy
OTU_clustering
OTU_clustering
  • IDBX03-20231017-0674
  • Root CategoryTools
  • Sub CategoryQiime2
  • EnvironmentBX_ENV_00
  • LanguagePython
  • CoreMulti
  • Version1.0
  • Registrantcogate
  • Registed Date2023-10-17
  • Modified Date2023-10-17
#OTU_clustering
Sequence_Feature
Sequence Feature
  • IDBX03-20231017-0673
  • Root CategoryTools
  • Sub CategoryQiime2
  • EnvironmentBX_ENV_00
  • LanguagePython
  • CoreMulti
  • Version1.0
  • Registrantcogate
  • Registed Date2023-10-17
  • Modified Date2023-10-24
#Sequence_Feature
Data_Import
qiime2 data import program
  • IDBX03-20231017-0668
  • Root CategoryTools
  • Sub CategoryQiime2
  • EnvironmentBX_ENV_00
  • LanguagePython
  • CoreMulti
  • Version1.0
  • Registrantcogate
  • Registed Date2023-10-17
  • Modified Date2023-10-24
#data import